For anyone interested the way I solved this was the following:
I noticed that the linking step when compiling was done with:
cc -o screen screen.o ansi.o fileio.o mark.o misc.o resize.o socket.o search.o tty.o term.o window.o utmp.o loadav.o putenv.o help.o termcap.o input.o attacher.o pty.o process.o display.o comm.o kmapdef.o acls.o braille.o braille_tsi.o logfile.o layer.o sched.o teln.o nethack.o encoding.o -lcurses -lelf -lsocket -lnsl -lkstat -lcrypt
I simply replaced -lcurses by -lncurses and now I have nice colors in vim :)
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