SSAHA keep on looping
- Hi there,
Well, I manage to compile and run SSAHA after switching to Linux
(Fedora core 5) and now another problem arise. I try to run the
program will the following parameters:
[root@hb1-c]# ssaha query.txt.fa data.txt.fa -wl 8
But the program keep on display the same hit like this after the the
FF 8est 15 Sequence 593 600 8 100.00
Alignment score: 8
Q: 000000008 gagcgacg
S: 000000593 GAGCGACG
It was alright when running without "-wl 8" but it doesn't return any hit.
Any idea to solve this?
> [root@hb1-c]# ssaha query.txt.fa data.txt.fa -wl 8Hi,
If you forward query.txt.fa and data.txt.fa I can take a look.
Dr Adam Spargo
High Performance Assembly Group email: aws@...
Wellcome Trust Sanger Institute Tel: +44 (0)1223 834244 x7728
Hinxton, Cambridge CB10 1SA Fax: +44 (0)1223 494919