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trouble building EnsemblServer

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  • Altaf Kassam
    I get the following error while attempting to build the Ensembl Client/Server binaries. I was unsuccessful in building the ssaha binary on this machine, so I
    Message 1 of 1 , Jun 4, 2003
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      I get the following error while attempting to build the Ensembl
      Client/Server binaries. I was unsuccessful in building the ssaha
      binary on this machine, so I built it on another linux box running
      gcc version 2.96. If anyone is still active in this group, I would
      really appreciate some help. My gcc version is 3.2 20020903 (Red
      Hat Linux 8.0 3.2-7):


      g++ -c -DEBUG_LEVEL1 -I/var/tmp/SSAHA -I/var/tmp/SSAHA/Global -
      I/var/tmp/SSAHA/SequenceReader -I/var/tmp/SSAHA/HashTable -
      I/var/tmp/SSAHA/QueryManager -D_REENTRANT SSAHAServer.cpp
      In file included from ClientServerUtils.h:61,
      from SSAHAServer.cpp:33:
      /var/tmp/SSAHA/Global/GlobalDefinitions.h: In member function
      `virtual void
      AllocatorLocal<T>::allocateAndZero(long unsigned int)':
      /var/tmp/SSAHA/Global/GlobalDefinitions.h:800: warning: `typename
      AllocatorLocal<T>::MyType' is implicitly a typename
      /var/tmp/SSAHA/Global/GlobalDefinitions.h:800: warning: implicit
      typename is
      deprecated, please see the documentation for details
      /var/tmp/SSAHA/Global/GlobalDefinitions.h: In member function
      `virtual void
      AllocatorLocal<T>::load(long unsigned int)':
      /var/tmp/SSAHA/Global/GlobalDefinitions.h:805: warning: `typename
      AllocatorLocal<T>::MyType' is implicitly a typename
      /var/tmp/SSAHA/Global/GlobalDefinitions.h:805: warning: implicit
      typename is
      deprecated, please see the documentation for details
      /var/tmp/SSAHA/Global/GlobalDefinitions.h: In member function
      `virtual void
      AllocatorLocal<T>::save()':
      /var/tmp/SSAHA/Global/GlobalDefinitions.h:809: warning: `typename
      AllocatorLocal<T>::MyType' is implicitly a typename
      /var/tmp/SSAHA/Global/GlobalDefinitions.h:809: warning: implicit
      typename is
      deprecated, please see the documentation for details
      In file included from SSAHAServer.cpp:33:
      ClientServerUtils.h: At global scope:
      ClientServerUtils.h:64: conflicting types for `typedef long unsigned
      int
      socklen_t'
      /usr/include/bits/socket.h:36: previous declaration as `typedef
      __socklen_t
      socklen_t'
      In file included from SSAHAServer.cpp:36:
      /var/tmp/SSAHA/SequenceReader/SequenceReaderLocal.h: In member
      function `void
      SequenceReaderLocal::push_back()':
      /var/tmp/SSAHA/SequenceReader/SequenceReaderLocal.h:187: no matching
      function
      for call to `std::vector<std::pair<WordSequence, std::string>,
      std::allocator<std::pair<WordSequence, std::string> > >::push_back
      ()'
      /usr/include/c++/3.2/bits/stl_vector.h:490: candidates are: void
      std::vector<_Tp, _Alloc>::push_back(const _Tp&) [with _Tp =
      std::pair<WordSequence, std::string>, _Alloc =
      std::allocator<std::pair<WordSequence, std::string> >]
      SSAHAServer.cpp: In function `int main(int, char**)':
      SSAHAServer.cpp:776: invalid conversion from `int*' to `socklen_t*'
      make: *** [SSAHAServer.o] Error 1
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