--- In email@example.com
, "coxtonyj" <anthony.j.cox@...> wrote:
> You're right, there does seem to be an issue when you specify '-sf
> hash' - both query and subject need to be in the same directory.
> Interestingly it always seems to be able to load in the hash table
> correctly, even if that is the one with the path. I will try to look
> into it.
Having looked at this some more I found that if you use a full path to
specify the location of the fasta file when you create the hash
initially you can then perform searches from anywhere. This gives me
a good work round for my problem. It might be a simple fix to expand
the filename to a full path when saving a hash?