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31Re: SSAHA API?

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  • jlim1197
    Apr 15, 2003
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      The only file I can find on the website is ssaha_v30_linux. Is this
      the file that I can run as a server process? If not, can someone
      provide the link? Thanks.


      --- In ssahausers@yahoogroups.com, Will Spooner <whs@s...> wrote:
      >
      > Hi Jonathan,
      >
      > Unfortunatly there is currently no Perl API to SSAHA. However, if you're
      > building a web interface, you may like to look at the EnsemblServer
      > appliction from the SSAHA distribution. This is a TCP/IP client/server
      > implementation, which means that you can run a persistent SSAHA
      server on
      > a different machine to the web server. This is how we run the Ensembl
      > sshaview web application.
      >
      > Regards,
      >
      > Will
      >
      > ---
      > Dr William Spooner whs@s...
      > Ensembl Web Developer http://www.ensembl.org
      >
      > On Mon, 14 Apr 2003, jlim1197 wrote:
      >
      > > Hi there,
      > >
      > > I'd like to integrate a SSAHA search into a web-based gene annotation
      > > system (using Perl) that I'm developing. Just wondering if there's an
      > > API
      > > or Perl port of SSAHA that I can use to tie it in...or is the
      > > command-line tool all that's available?
      > >
      > > Thanks
      > >
      > >
      > >
      > >
      > >
      > > Jonathan Lim
      > > Bioinformatics Software Developer
      > > Centre for Molecular Medicine and Therapeutics
      > > University of British Columbia
      > >
      > >
      > >
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