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23Test 17

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  • stburk <sb@bioinf.uni-sb.de>
    Jan 24, 2003
      Hello!

      Today i tried to compile and run SSAHA V3.0 on a linux machine
      using
      gcc version 2.95.4 20011002 (Debian prerelease)

      While it compiled fine, running testSequenceReaderFasta resulted
      in Test 17 failing with:

      testSequenceReaderFasta:
      /home/stburk/MPIHOME/SSAHA/SequenceReader/testSequenceReaderFasta.cpp:1017:
      int main(): Assertion `c1==c2' failed.
      Aborted

      Also, if i run testSSAHA.csh it fails during
      TEST: Checking main runs with default arguments
      with the output:

      constructing QueryManager
      Info: running DNA query against DNA hash table.
      FF
      p1_1a788a01.p1c
      1
      504
      p1_1a788a01.p1c
      1
      504
      504
      100.00
      Segmentation fault

      I already started to locate the problem and it appears to occur in
      void MatchTaskAlign::operator()(MatchStore& store)
      included from MatchAligner.cpp
      when calling
      subjectSource_.extractSource( &pSubject, //subjectData,
      (*i)->getSubjectNum(),
      (*i)->getSubjectStart(),
      (*i)->getSubjectEnd() );

      Any help would be appreciated (i will try to find out more during the
      weekend myself).

      Thanks,

      Stefan
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