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RE: [dchip] Re: map genes to chromosome

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  • Cheng Li
    Eric, You can click the Analysis icon on the upper-left corner to go to the analysis view. Cheng ... From: eric collisson [mailto:ericcollisson@yahoo.com]
    Message 1 of 6 , Mar 1, 2005
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      Eric,

      You can click the "Analysis" icon on the upper-left corner to go to the
      analysis view.

      Cheng

      -----Original Message-----
      From: eric collisson [mailto:ericcollisson@...]
      Sent: Monday, February 28, 2005 10:36 PM
      To: dchip@yahoogroups.com
      Subject: RE: [dchip] Re: map genes to chromosome


      thanks,
      this web site says:
      P-values are calculated for all stretches containing <=20 selected genes
      (genes specified in the "gene list" in "Analysis/Map chromosome") to assess
      the significance of "gene proximity", and the significant P-values are
      reported in the "Analysis View".

      where is the "Analysis view"? I get a nice map but see no p-values and
      cannot find where to look for them
      also, what does a blue box around a chormosomal region signify?
      thanks
      -eric

      Cheng Li <cli@...> wrote:
      You can use Home and End keys to go to other chromosomes. Alternatively,
      "Analysis/Genome" can be used to view all chromosomes:

      http://biosun1.harvard.edu/complab/dchip/map%20chromosome.htm

      Cheng

      -----Original Message-----
      From: zaggin [mailto:ericcollisson@...]
      Sent: Monday, February 28, 2005 4:25 PM
      To: dchip@yahoogroups.com
      Subject: [dchip] Re: map genes to chromosome


      I also am intrested in how to do this and am having a similar
      problem. I am using the U133 genome info file. I get chomosome 1
      only instead of the the X chomosome
      as an additional factor is it possible to analyze statistically
      signifigant upregulation of a specific genomic region, stipulated by
      say UCSC numbers?
      thanks
      -eric







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