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2749

new dChip user group and onsite course Dear all, We now have a new dChip user group at here: http://groups.google.com/group/dchip-software Also,

Cheng Li
Dec 31, 2008
#2749
 

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2747

R interface Lene, This is the latest dChip: http://biosun1.harvard.edu/~cli/dchip.exe [V12/14/07+] Install R-COM (run

Cheng Li
May 14, 2008
#2747
 

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2746

Multiple Testing Correction Hi Cheng, Can dCHIP perform Multiple Testing Correction e.g Benjamini and Hochberg, Bonferroni etc. I could not find them in Compare samples. Just wondering if

jai
May 13, 2008
#2746
 

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2745

Installing R-COM interface To Dr. Li, I have recently installed dChip to analyze some array data. In addition I have installed the program R to be able to do some LDA. Installing the

rasklene
May 13, 2008
#2745
 

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2741

Re: Help: making information files!! I see. Thank you for your quick response. -Chia --- On Fri, 5/9/08, Cheng Li wrote: From: Cheng Li Subject: RE:

Chia Chu
May 9, 2008
#2741
 

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2740

Re: Help: making information files!! Chia, dChip has not been tested on making gene info file for this array. You may manually copy and paste columns to make a file. Unzip this file for a format:

Cheng Li
May 9, 2008
#2740
 

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2739

Help: making information files!! Hi, I want to use dchip to analyze some e_coli_2 arrays but the program shuts down due to error every time when I try to generate information files from

Jerry Chu
May 9, 2008
#2739
 

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2738

Re: dchipd gene info files- pig Hello Marsha, You can make the gene info file within dChip using the Affy porcine annotations .csv. I made them 2 years ago with no problem. Look under

David Carter
May 6, 2008
#2738
 

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2737

dchipd gene info files- pig Hello, Can you tell me if gene info files are available for the pig? I've tried looking for them on Affymetrix's site to no avail. Thanks! Marsha C.

daughterofthedancingarabian
May 5, 2008
#2737
 

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2736

Re: Individual array expression values disappeared Carol, You can try checking "Combine comparisons/output expression values". Cheng Li _____ From: dchip@yahoogroups.com [mailto:dchip@yahoogroups.com] On Behalf

Cheng Li
May 2, 2008
#2736
 

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2735

Individual array expression values disappeared Hello, I recently replaced my dCHIP2005 with the latest download from the website. My compare_result files with the old version would show probeset expression

mothersquid
May 2, 2008
#2735
 

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2734

Re: Help: Using dCHip for CN and LOH studies Please post dChip error messages. CL ... file, ... 5.0

Cheng Li
May 1, 2008
#2734
 

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2733

Combine subarrays 500k Dear Dr Li: I can visualize and analyze each 250k array set but I don't arrive to combine 250k Nsp and Sty arrays. Please, could you to indicate me how to

Antonio José Alberdi
Apr 30, 2008
#2733
 

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2732

Help: Using dCHip for CN and LOH studies Hi, Can someone help me to analyze CN and LOH using dChip from SNP 5.0 array data. I need to know detail infoamtion regarding the the necessary files for

jishan561109
Apr 27, 2008
#2732
 

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2731

SNP 5.0 CDF file Dr. Li, Which CDF file should I use for dChip copy number and LOh studies. BTW, Have you updated you dChip user manual recently? the latest on I found is 2005

jishan561109
Apr 26, 2008
#2731
 
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