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Article: Thousand-chamber biochip debuts

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  • genomik2
    Microfluidics storage. This could lower costs (eventually - more expensive now) and environmental concerns. 50 picoliters is cheaper and less hazardous then
    Message 1 of 1 , Oct 3, 2002
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      Microfluidics storage.
      This could lower costs (eventually - more expensive now) and
      environmental concerns. 50 picoliters is cheaper and less hazardous
      then milliliters. Also this allows diagnostics on a very high
      throughput level. The bottleneck though, is not in the rest of the
      equipment for sample preparation and analysis. The machines
      interacting with this can take up a room. When they get smaller &
      cheaper, the technology will become more useful. There are lots of
      groups working in this area now, so advances may happen soon. The
      genomics Microarray people are working on similar things as well.
      Expect convergence.
      Erik
      +++++++++++++++++++++++++++++++++++++

      Thousand-chamber biochip debuts

      By Eric Smalley, Technology Research News

      When the computer chip was invented forty-four years ago, it set
      the stage for computers to shrink from room-size behemoths filled
      with light-bulb-size vacuum tubes to handheld devices powered by
      microscopic transistors.

      Researchers from the California Institute of Technology are
      mirroring that effort with a chip that stores tiny drops of fluid
      rather than magnetic or electronic bits of information.

      The researchers are aiming to replace roomfuls of chemistry
      equipment with devices based on a fluidic storage chip that can
      store 1,000 different substances in an area slightly larger than a
      postage stamp.

      The technology could eventually allow experiments that involve
      hundreds or thousands of liquid samples to run on desktop or even
      handheld devices, potentially reducing the cost and complexity of
      medical testing, genetics research and drug development, said
      Stephen Quake, an associate professor of physics and applied physics
      at Caltech. "Small volumes mean lower cost for expensive reagents,
      and mean that samples can be tested for a broader range" of
      diseases, he said.

      The fluidic storage chip has 1,000 chambers arranged in a 25 by 40
      grid with 3,574 microvalves. "It's small plumbing -- pipes, valves,
      pumps, et cetera -- all integrated on a small rubber chip," said
      Quake.

      Each chamber holds 250 picoliters, or about one 80th of a drop of
      water. The connecting channels are 100 microns wide and nine microns
      high, which is about twice as high as red blood cells are wide.

      Like the bits that store 1s and 0s in computer memory, the chambers
      that store fluids at the intersections of the rows and columns of
      the researchers' chip can be accessed individually. The key is a
      pair of multiplexors that address each chamber by row and column.
      Computer memory chips use similar electronic multiplexors to access
      individual bits of digital information.

      In the fluidic storage chip, the row multiplexor pushes fluids along
      one or more rows to fill or purge the chambers in those rows, and
      the column multiplexor applies pressure to close the input and
      output valves of the chambers along one or more of the columns.

      The fluidics multiplexors allow the researchers to control the 1,000
      chambers using only 22 connections to the chip, said Quake. "We can
      control exponentially many fluid lines," as outside connections, he
      said. Thirty connections could theoretically control 32,000 fluid
      lines and 40 connections could theoretically control one million
      fluid lines. "This greatly simplifies the input/output and
      connections required from the real world to the chip," he said.

      To make the fluidic chip, the researchers etched patterns into
      plastic molds using the same photolithography process used to make
      computer chips, then used the molds to shape thin layers of rubber.

      The top layer contains fluid channels and chambers, and the bottom
      layer holds multiplexors and control lines. In between is a thin
      sheet of rubber. The intersection of a fluid channel and a control
      line forms a valve; hydraulic pressure in the control line deflects
      the thin membrane between the top and bottom layers and pinches off
      the fluid channel. The multiplexors determine where the pressure is
      applied in order to control the flow.

      The chip is made completely of flexible silicone rubber, rather than
      the hard silicon used in computer chips. Fluids enter the chip
      through steel pins connected through holes punched into the rubber,
      which forms a tight seal around the pins.

      The researchers also made a chip-size comparator, which measures
      samples against a scale or standard to determine properties like the
      pH concentration of a fluid.

      The researchers' comparator has an array of 256 chambers arranged in
      four columns of 64, and is about twice the size of the storage chip.
      It contains 2,056 microvalves and performs more complicated
      manipulations than the storage chip, according to Quake. Two fluids
      can be mixed in any number of the chambers and the results from any
      chamber in each column can be removed for further examination, he
      said.

      The researchers took the comparator through its paces by loading
      individual bacteria into some of the chambers and adding a fluid
      that becomes fluorescent in the presence of a particular enzyme.
      This allowed the researchers to determine which bacteria produced
      the enzyme.

      There are limitations to the rubber chips, according to Quake. Some
      liquids, like certain organic solvents, can break down the chip's
      rubber material, and there is a danger of contamination from
      molecules diffusing through the walls of the chambers and channels.
      There is also a possibility that some molecules will stick to the
      walls after the chip's contents have been emptied.

      In addition, the chip designs are limited by the need to avoid cross-
      contamination as samples are shunted about. For example, the
      contents of only one of the 64 chambers in each column of the
      comparator can be removed without being contaminated because any
      residue from the first sample would contaminate subsequent samples
      passing through the channel, according to Quake.

      The researchers' work is an impressive and significant advance, said
      Kenny Breuer, an associate professor of engineering at Brown
      University. "There have been many attempts at building such
      microfluidic elements, but this is by far the most complex that I
      have seen, and the approach... offers the most flexibility for
      building a wide variety of microfluidic systems," he said.

      The system does have limitations, Breuer added. "There is...
      significant hidden machinery that is required to operate the device -
      - supplies of compressed air, banks of solenoidal valves and, most
      importantly, very large volumes of fluid that need to be flushed
      through the system as each cell is loaded and purged," he said. The
      volume of this supporting infrastructure could limit the size and
      complexity of fluidic systems made with this technology, he said.

      It is also true, however, that the first electronic computer chips
      used large amounts of power and were not able to do much, but "still
      enabled a revolution in electronics and engineering," said Breuer.
      The ability to create large-scale integrated microfluidics systems
      with such complexity is very exciting, even if this particular
      design may eventually be supplanted by other approaches, he said.

      The researchers next plan to use the devices in biological research,
      said Quake. "One area will be in environmental microbiology."

      The technology could be used in practical applications in one to two
      years, said Quake. There are some manufacturing issues that need to
      be addressed, but "it is already working in some practical
      applications," he said. Quake is a director of Fluidigm Corporation,
      which is commercializing technology.

      Quake's research colleagues were Todd Thorsen and Sebastian Maerkl.
      They published the research in the September 26, 2002 online issue
      of the journal Science. The research was funded by the Defense
      Advanced Research Projects Agency (DARPA) and the Army Research
      Office (ARO).

      Timeline: 1-2 years
      Funding: Government
      TRN Categories: Microfluidics and BioMEMS; Biotechnology;
      Engineering
      Story Type: News
      Related Elements: Technical paper, "Microfluidic Large-Scale
      Integration," Sciencexpress, September 26, 2002
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