I'm trying to run ssaha on a fedora 7 (32bit) system and it's dying
with an error every time I run it.
I'm running the latest v33 version of ssaha, but I've also tried v31c
which also fails.
I can successfully compute the hashtable from my subject fasta files,
but when I try to search against this with a short test sequence ssaha
/data/public/DNA/Genomes/NCBIM36/Current/ncbi36_1 -qf fasta -sf hash
[snip lots of output]
Info: running DNA query against DNA hash table.
const char* SourceReaderIndex::extractName(SequenceNumber): Assertion
Any ideas about how to make this work?